TOOLS

This is our Biocomputing Toolkit.

DeepCentroid: Deep Cascade Centroid Classifier

Function: A precision medical research method based on deep cascade centroid classifier is an integrated learning method with cascade structure, which can perform representation learning.
It can be applied to early diagnosis, prognosis and drug sensitivity prediction of cancer.

https://github.com/xiexiexiekuan/DeepCentroid

Ensemble Classifier based on gene synergistic network

Paper: Lu Bo, Xiong-Hui Zhou*. Ensemble Classifier based on gene synergistic network improves breast cancer outcome prediction. IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2019; 207-210.

Function: Using gene expression data and matched clinical data od cancer patients, construct gene synergistic networks.

https://github.com/lubo1220/Ensemble-Classifier-based-on-gene-synergistic-network.git


DATA

Here you can download various data and published software packages of the laboratory.